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Sample GSM1519016 Query DataSets for GSM1519016
Status Public on Mar 01, 2015
Title PC3 cells treated with SAM, biological replicate 3
Sample type genomic
Source name PC3 cells treated with SAM
Organism Homo sapiens
Characteristics cell line: PC3
cell type: human invasive prostate cancer cell line
treatment: S-adenosylmethionine (SAM)
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified from human prostate cancer cell lines using the Qiagen DNeasy Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChip using standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting.
Data processing BeadStudio software v3.2
Submission date Oct 03, 2014
Last update date Mar 01, 2015
Contact name Barbara Stefanska
Organization name The University of British Columbia
Department Land and Food Systems
Lab Stefanska Lab
Street address 2205 East Mall
City Vancouver
State/province BC
ZIP/Postal code V6T 1Z4
Country Canada
Platform ID GPL13534
Series (1)
GSE62053 S-adenosylmethionine (SAM) changes DNA methylation patterns in prostate cancer cells

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.5952842
cg00000108 0.9413425
cg00000109 0.8952745
cg00000165 0.8974603
cg00000236 0.8953404
cg00000289 0.7130642
cg00000292 0.8976169
cg00000321 0.746196
cg00000363 0.4090253
cg00000622 0.01939131
cg00000658 0.8206716
cg00000714 0.1659309
cg00000721 0.9328844
cg00000734 0.07930931
cg00000769 0.05770834
cg00000807 0.8653353
cg00000884 0.7735512
cg00000905 0.10306
cg00000924 0.5248555
cg00000948 0.8971495

Total number of rows: 485577

Table truncated, full table size 10023 Kbytes.

Supplementary file Size Download File type/resource
GSM1519016_8221924102_R06C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1519016_8221924102_R06C02_Red.idat.gz 4.2 Mb (ftp)(http) IDAT
Processed data included within Sample table

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