GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1519015 Query DataSets for GSM1519015
Status Public on Mar 01, 2015
Title PC3 cells treated with SAM, biological replicate 2
Sample type genomic
Source name PC3 cells treated with SAM
Organism Homo sapiens
Characteristics cell line: PC3
cell type: human invasive prostate cancer cell line
treatment: S-adenosylmethionine (SAM)
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified from human prostate cancer cell lines using the Qiagen DNeasy Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChip using standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting.
Data processing BeadStudio software v3.2
Submission date Oct 03, 2014
Last update date Mar 01, 2015
Contact name Barbara Stefanska
Organization name The University of British Columbia
Department Land and Food Systems
Lab Stefanska Lab
Street address 2205 East Mall
City Vancouver
State/province BC
ZIP/Postal code V6T 1Z4
Country Canada
Platform ID GPL13534
Series (1)
GSE62053 S-adenosylmethionine (SAM) changes DNA methylation patterns in prostate cancer cells

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.6411926
cg00000108 0.9285703
cg00000109 0.9055594
cg00000165 0.9334016
cg00000236 0.9185451
cg00000289 0.6804763
cg00000292 0.9171941
cg00000321 0.7709522
cg00000363 0.3863824
cg00000622 0.01448971
cg00000658 0.8194774
cg00000714 0.1607681
cg00000721 0.9392911
cg00000734 0.0844162
cg00000769 0.05177229
cg00000807 0.8969483
cg00000884 0.8157762
cg00000905 0.1112081
cg00000924 0.5369578
cg00000948 0.9179796

Total number of rows: 485577

Table truncated, full table size 9946 Kbytes.

Supplementary file Size Download File type/resource
GSM1519015_8221924010_R06C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1519015_8221924010_R06C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap