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Sample GSM1519012 Query DataSets for GSM1519012
Status Public on Mar 01, 2015
Title PC3 cells treated with vehicle control (SAH), biological replicate 2
Sample type genomic
Source name PC3 cells treated with vehicle control (SAH)
Organism Homo sapiens
Characteristics cell line: PC3
cell type: human invasive prostate cancer cell line
treatment: S-adenosylhomocysteine (SAH) vehicle control
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified from human prostate cancer cell lines using the Qiagen DNeasy Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChip using standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting.
Data processing BeadStudio software v3.2
Submission date Oct 03, 2014
Last update date Mar 01, 2015
Contact name Barbara Stefanska
Organization name The University of British Columbia
Department Land and Food Systems
Lab Stefanska Lab
Street address 2205 East Mall
City Vancouver
State/province BC
ZIP/Postal code V6T 1Z4
Country Canada
Platform ID GPL13534
Series (1)
GSE62053 S-adenosylmethionine (SAM) changes DNA methylation patterns in prostate cancer cells

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.6686192
cg00000108 0.9359809
cg00000109 0.9243588
cg00000165 0.9282284
cg00000236 0.9401324
cg00000289 0.6700876
cg00000292 0.920892
cg00000321 0.8266798
cg00000363 0.402036
cg00000622 0.01396478
cg00000658 0.7690413
cg00000714 0.1713099
cg00000721 0.947688
cg00000734 0.08831228
cg00000769 0.04762376
cg00000807 0.8683252
cg00000884 0.7959914
cg00000905 0.123553
cg00000924 0.5152647
cg00000948 0.8958169

Total number of rows: 485577

Table truncated, full table size 9959 Kbytes.

Supplementary file Size Download File type/resource
GSM1519012_8221924010_R05C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1519012_8221924010_R05C02_Red.idat.gz 4.2 Mb (ftp)(http) IDAT
Processed data included within Sample table

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