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Sample GSM1519011 Query DataSets for GSM1519011
Status Public on Mar 01, 2015
Title PC3 cells treated with vehicle control (SAH), biological replicate 1
Sample type genomic
Source name PC3 cells treated with vehicle control (SAH)
Organism Homo sapiens
Characteristics cell line: PC3
cell type: human invasive prostate cancer cell line
treatment: S-adenosylhomocysteine (SAH) vehicle control
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified from human prostate cancer cell lines using the Qiagen DNeasy Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChip using standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting.
Data processing BeadStudio software v3.2
Submission date Oct 03, 2014
Last update date Mar 01, 2015
Contact name Barbara Stefanska
Organization name The University of British Columbia
Department Land and Food Systems
Lab Stefanska Lab
Street address 2205 East Mall
City Vancouver
State/province BC
ZIP/Postal code V6T 1Z4
Country Canada
Platform ID GPL13534
Series (1)
GSE62053 S-adenosylmethionine (SAM) changes DNA methylation patterns in prostate cancer cells

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.6461446
cg00000108 0.9458936
cg00000109 0.8656884
cg00000165 0.8883032
cg00000236 0.9136298
cg00000289 0.7386272
cg00000292 0.8931519
cg00000321 0.81207
cg00000363 0.4373493
cg00000622 0.007718822
cg00000658 0.7906718
cg00000714 0.2199442
cg00000721 0.9090979
cg00000734 0.1114325
cg00000769 0.05637477
cg00000807 0.884128
cg00000884 0.8117512
cg00000905 0.1362967
cg00000924 0.4870118
cg00000948 0.904385

Total number of rows: 485577

Table truncated, full table size 10010 Kbytes.

Supplementary file Size Download File type/resource
GSM1519011_8221916147_R05C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1519011_8221916147_R05C02_Red.idat.gz 4.2 Mb (ftp)(http) IDAT
Processed data included within Sample table

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