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Sample GSM1518573 Query DataSets for GSM1518573
Status Public on Oct 04, 2014
Title SCLC_tissue_cluster 2 [GTB.5395]
Sample type RNA
Source name Ganken Tissue Bank
Organism Homo sapiens
Characteristics tissue: frozen tissue
cimp: cluster 2
gender: male
age: 74y
Treatment protocol All specimens were grossly dissected and snap-frozen in liquid nitrogen typically within 15 min of removal, and were kept frozen at -80℃ until use
Extracted molecule total RNA
Extraction protocol RNAeasy Mini Kit (Qiagen, Hilden, Germany) according to the manufacturer’s instructions.
Label Cy3
Label protocol Fluorescent Labeling of samples according to the manufacturer’s instructions.
Hybridization protocol Hybridization and Microarray Wash according to the manufacturer’s instructions.
Scan protocol Agilent SureScan microarray scanner was used for microarray scanning according to the manufacturer’s instructions.
Description RNAeasy Mini Kit (Qiagen, Hilden, Germany)
Data processing Agilent Feature Extraction software was used to output the Feature Extraction QC report. RNA Integrity Number (RIN) index was calculated for each sample using Agilent 2100 Expert software. In order to reduce experimental biases in microarray analysis due to poor RNA quality, only RNA samples with RIN number > 4 were further processed.
Submission date Oct 03, 2014
Last update date Oct 04, 2014
Contact name YUICHI SAITO
Phone 81335200111
Organization name The Cancer Institute of Japanese Foundation Cancer Research
Department Pathology
Street address 3-8-31 Ariake
City Koto
State/province Tokyo
ZIP/Postal code 1358550
Country Japan
Platform ID GPL13607
Series (1)
GSE62021 Prediction of prognosis for small cell lung cancer based on genome-wide methylation analyses with surgical materials and robust clustering methods

Data table header descriptions
VALUE Quantile normalized signal intensity

Data table
1 35932.8
2 -6.72959
3 -10.1412
4 278.27
5 209.56
6 118.366
7 3588.06
8 398.816
9 -11.5752
10 50.4196
11 -1.41492
12 728.593
13 723.033
14 180.518
15 3665.24
16 -8.68878
17 90.7271
18 -15.7057
19 2.88431
20 431.269

Total number of rows: 62976

Table truncated, full table size 853 Kbytes.

Supplementary file Size Download File type/resource
GSM1518573_GTB.5395.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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