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Sample GSM1518569 Query DataSets for GSM1518569
Status Public on Oct 04, 2014
Title SCLC_tissue_cluster 1 [GTB.2942]
Sample type RNA
Source name Ganken Tissue Bank
Organism Homo sapiens
Characteristics tissue: frozen tissue
cimp: cluster 1
gender: female
age: 73y
Treatment protocol All specimens were grossly dissected and snap-frozen in liquid nitrogen typically within 15 min of removal, and were kept frozen at -80℃ until use
Extracted molecule total RNA
Extraction protocol RNAeasy Mini Kit (Qiagen, Hilden, Germany) according to the manufacturer’s instructions.
Label Cy3
Label protocol Fluorescent Labeling of samples according to the manufacturer’s instructions.
Hybridization protocol Hybridization and Microarray Wash according to the manufacturer’s instructions.
Scan protocol Agilent SureScan microarray scanner was used for microarray scanning according to the manufacturer’s instructions.
Description RNAeasy Mini Kit (Qiagen, Hilden, Germany)
Data processing Agilent Feature Extraction software was used to output the Feature Extraction QC report. RNA Integrity Number (RIN) index was calculated for each sample using Agilent 2100 Expert software. In order to reduce experimental biases in microarray analysis due to poor RNA quality, only RNA samples with RIN number > 4 were further processed.
Submission date Oct 03, 2014
Last update date Oct 04, 2014
Contact name YUICHI SAITO
Phone 81335200111
Organization name The Cancer Institute of Japanese Foundation Cancer Research
Department Pathology
Street address 3-8-31 Ariake
City Koto
State/province Tokyo
ZIP/Postal code 1358550
Country Japan
Platform ID GPL13607
Series (1)
GSE62021 Prediction of prognosis for small cell lung cancer based on genome-wide methylation analyses with surgical materials and robust clustering methods

Data table header descriptions
VALUE Quantile normalized signal intensity

Data table
1 28519.7
2 -15.0444
3 -3.41991
4 352.515
5 181.011
6 47.1913
7 2635.28
8 284.625
9 1.65115
10 59.5556
11 -5.35848
12 1177.21
13 1385.67
14 119.917
15 2467.59
16 12.3309
17 50.4716
18 -10.1226
19 12.8416
20 452.924

Total number of rows: 62976

Table truncated, full table size 853 Kbytes.

Supplementary file Size Download File type/resource
GSM1518569_GTB.2942.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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