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Sample GSM1518566 Query DataSets for GSM1518566
Status Public on Oct 04, 2014
Title SCLC_tissue_cluster 2 [GTB.2241]
Sample type RNA
 
Source name Ganken Tissue Bank
Organism Homo sapiens
Characteristics tissue: frozen tissue
cimp: cluster 2
gender: male
age: 67y
Treatment protocol All specimens were grossly dissected and snap-frozen in liquid nitrogen typically within 15 min of removal, and were kept frozen at -80℃ until use
Extracted molecule total RNA
Extraction protocol RNAeasy Mini Kit (Qiagen, Hilden, Germany) according to the manufacturer’s instructions.
Label Cy3
Label protocol Fluorescent Labeling of samples according to the manufacturer’s instructions.
 
Hybridization protocol Hybridization and Microarray Wash according to the manufacturer’s instructions.
Scan protocol Agilent SureScan microarray scanner was used for microarray scanning according to the manufacturer’s instructions.
Description RNAeasy Mini Kit (Qiagen, Hilden, Germany)
Data processing Agilent Feature Extraction software was used to output the Feature Extraction QC report. RNA Integrity Number (RIN) index was calculated for each sample using Agilent 2100 Expert software. In order to reduce experimental biases in microarray analysis due to poor RNA quality, only RNA samples with RIN number > 4 were further processed.
 
Submission date Oct 03, 2014
Last update date Oct 04, 2014
Contact name YUICHI SAITO
E-mail(s) k3699004@gmail.com
Phone 81335200111
Organization name The Cancer Institute of Japanese Foundation Cancer Research
Department Pathology
Street address 3-8-31 Ariake
City Koto
State/province Tokyo
ZIP/Postal code 1358550
Country Japan
 
Platform ID GPL13607
Series (1)
GSE62021 Prediction of prognosis for small cell lung cancer based on genome-wide methylation analyses with surgical materials and robust clustering methods

Data table header descriptions
ID_REF
VALUE Quantile normalized signal intensity

Data table
ID_REF VALUE
1 95727.2
2 -6.707
3 -7.93926
4 124.179
5 47.0755
6 113.253
7 596.193
8 1474.09
9 4.20252
10 60.2318
11 23.0827
12 528.906
13 382.782
14 168.491
15 410.717
16 -1.72549
17 3.18943
18 3.5495
19 10.0478
20 528.682

Total number of rows: 62976

Table truncated, full table size 855 Kbytes.




Supplementary file Size Download File type/resource
GSM1518566_GTB.2241.txt.gz 3.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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