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Sample GSM1517174 Query DataSets for GSM1517174
Status Public on Jan 15, 2015
Title PBBA4_mRNA
Sample type RNA
 
Source name CD19+ B cells
Organism Homo sapiens
Characteristics tissue: Activated (IL4, anti-CD40, IgM, and IgD) peripheral blood
tumor: none
Sex: female
previously treated for nhl: NA
cell type: peripheral blood B cells
Treatment protocol none
Growth protocol none
Extracted molecule total RNA
Extraction protocol RNA was purified using Qiagen RNeasy Kits according to the manufacturer’s protocol.
Label biotin
Label protocol Purified RNA was amplified using Nugen Ovation Pico SL or Ovation Pico kits and labeled using Nugen Encore Biotin kit
 
Hybridization protocol Products were hybridized to Affymetrix Human Gene 1.0 ST arrays according to the manufacturer’s protocol
Scan protocol GS3000
Description Gene expression analysis was performed for peripheral blood B cells using Affymetrix Human Gene 1.0 ST arrays
Data processing Gene expression levels were determined using the Affymetrix Expression Console software (v1.2.0.20) with exon-level RMA analysis and default settings
 
Submission date Sep 30, 2014
Last update date Jan 15, 2015
Contact name Jacqueline Payton
E-mail(s) jpayton@wustl.edu
Organization name Washington University School of Medicine
Department Pathology and Immunology
Street address 660 S. Euclid Ave
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platform ID GPL10739
Series (2)
GSE61912 Enhancer Sequence Variants and Transcription Factor Deregulation Synergize to Construct Pathogenic Regulatory Circuits in B Cell Lymphoma (array)
GSE62246 Enhancer Sequence Variants and Transcription Factor Deregulation Synergize to Construct Pathogenic Regulatory Circuits in B Cell Lymphoma

Data table header descriptions
ID_REF
VALUE log2-rma-exon-default-dabg
DETECTION P-VALUE

Data table
ID_REF VALUE DETECTION P-VALUE
7892501 3.35714 0.000413982
7892502 3.94559 0.000101977
7892503 1.87733 0.120935
7892504 8.14318 3.98182e-07
7892505 1.96544 0.156868
7892506 1.75835 0.657212
7892507 5.81699 0.000242365
7892508 3.58982 0.018218
7892509 11.2116 4.44414e-09
7892510 4.60693 0.00179826
7892511 3.96747 6.68691e-05
7892512 5.09288 0.0047703
7892513 3.64718 0.0145693
7892514 8.51996 5.17436e-09
7892515 9.07303 4.55741e-09
7892516 5.86367 8.5896e-07
7892517 4.55623 0.00608633
7892518 3.1654 0.064311
7892519 3.60643 0.129759
7892520 8.35654 1.68883e-07

Total number of rows: 257430

Table truncated, full table size 6561 Kbytes.




Supplementary file Size Download File type/resource
GSM1517174_PBBA4.CEL.gz 3.7 Mb (ftp)(http) CEL
GSM1517174_PBBA4.rma-exon-default-dabg.chp.gz 2.2 Mb (ftp)(http) CHP
Processed data provided as supplementary file
Processed data included within Sample table

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