GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1517173 Query DataSets for GSM1517173
Status Public on Jan 15, 2015
Title PBBA3_mRNA
Sample type RNA
Source name CD19+ B cells
Organism Homo sapiens
Characteristics tissue: Activated (IL4, anti-CD40, IgM, and IgD) peripheral blood
tumor: none
Sex: female
previously treated for nhl: NA
cell type: peripheral blood B cells
Treatment protocol none
Growth protocol none
Extracted molecule total RNA
Extraction protocol RNA was purified using Qiagen RNeasy Kits according to the manufacturer’s protocol.
Label biotin
Label protocol Purified RNA was amplified using Nugen Ovation Pico SL or Ovation Pico kits and labeled using Nugen Encore Biotin kit
Hybridization protocol Products were hybridized to Affymetrix Human Gene 1.0 ST arrays according to the manufacturer’s protocol
Scan protocol GS3000
Description Gene expression analysis was performed for peripheral blood B cells using Affymetrix Human Gene 1.0 ST arrays
Data processing Gene expression levels were determined using the Affymetrix Expression Console software (v1.2.0.20) with exon-level RMA analysis and default settings
Submission date Sep 30, 2014
Last update date Jan 15, 2015
Contact name Jacqueline Payton
Organization name Washington University School of Medicine
Department Pathology and Immunology
Street address 660 S. Euclid Ave
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL10739
Series (2)
GSE61912 Enhancer Sequence Variants and Transcription Factor Deregulation Synergize to Construct Pathogenic Regulatory Circuits in B Cell Lymphoma (array)
GSE62246 Enhancer Sequence Variants and Transcription Factor Deregulation Synergize to Construct Pathogenic Regulatory Circuits in B Cell Lymphoma

Data table header descriptions
VALUE log2-rma-exon-default-dabg

Data table
7892501 2.2238 0.085029
7892502 4.25878 5.8441e-05
7892503 1.0306 0.301383
7892504 8.19787 1.35692e-06
7892505 1.64406 0.0356005
7892506 1.79018 0.312643
7892507 2.96205 0.0667551
7892508 2.90987 0.0127963
7892509 10.1841 4.44414e-09
7892510 1.47257 0.379269
7892511 3.52192 0.000295469
7892512 4.17902 0.010832
7892513 1.06779 0.696762
7892514 8.82558 5.17436e-09
7892515 8.28332 2.90566e-08
7892516 6.94511 2.31304e-08
7892517 5.76198 3.86591e-05
7892518 1.54223 0.314149
7892519 2.04096 0.716733
7892520 8.9745 4.08884e-08

Total number of rows: 257430

Table truncated, full table size 6526 Kbytes.

Supplementary file Size Download File type/resource
GSM1517173_PBBA3.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM1517173_PBBA3.rma-exon-default-dabg.chp.gz 2.1 Mb (ftp)(http) CHP
Processed data provided as supplementary file
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap