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Sample GSM1517171 Query DataSets for GSM1517171
Status Public on Jan 15, 2015
Title PBBA1_mRNA
Sample type RNA
Source name CD19+ B cells
Organism Homo sapiens
Characteristics tissue: Activated (IL4, anti-CD40, IgM, and IgD) peripheral blood
tumor: none
Sex: male
previously treated for nhl: NA
cell type: peripheral blood B cells
Treatment protocol none
Growth protocol none
Extracted molecule total RNA
Extraction protocol RNA was purified using Qiagen RNeasy Kits according to the manufacturer’s protocol.
Label biotin
Label protocol Purified RNA was amplified using Nugen Ovation Pico SL or Ovation Pico kits and labeled using Nugen Encore Biotin kit
Hybridization protocol Products were hybridized to Affymetrix Human Gene 1.0 ST arrays according to the manufacturer’s protocol
Scan protocol GS3000
Description Gene expression analysis was performed for peripheral blood B cells using Affymetrix Human Gene 1.0 ST arrays
Data processing Gene expression levels were determined using the Affymetrix Expression Console software (v1.2.0.20) with exon-level RMA analysis and default settings
Submission date Sep 30, 2014
Last update date Jan 15, 2015
Contact name Jacqueline Payton
Organization name Washington University School of Medicine
Department Pathology and Immunology
Street address 660 S. Euclid Ave
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL10739
Series (2)
GSE61912 Enhancer Sequence Variants and Transcription Factor Deregulation Synergize to Construct Pathogenic Regulatory Circuits in B Cell Lymphoma (array)
GSE62246 Enhancer Sequence Variants and Transcription Factor Deregulation Synergize to Construct Pathogenic Regulatory Circuits in B Cell Lymphoma

Data table header descriptions
VALUE log2-rma-exon-default-dabg

Data table
7892501 1.68673 0.590996
7892502 3.3089 0.00151025
7892503 0.973801 0.54
7892504 9.47452 4.22762e-08
7892505 1.6292 0.0401228
7892506 1.83764 0.543171
7892507 4.76326 0.00322417
7892508 3.92116 0.000281937
7892509 9.25905 4.44414e-09
7892510 1.47982 0.295875
7892511 2.67104 0.0117131
7892512 2.3697 0.261751
7892513 1.09236 0.752373
7892514 8.07277 5.17436e-09
7892515 9.35187 4.55741e-09
7892516 5.35191 1.97832e-06
7892517 1.72825 0.342729
7892518 1.29486 0.647978
7892519 2.31865 0.74689
7892520 9.42355 9.18211e-08

Total number of rows: 257430

Table truncated, full table size 6480 Kbytes.

Supplementary file Size Download File type/resource
GSM1517171_PBBA1.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM1517171_PBBA1.rma-exon-default-dabg.chp.gz 2.1 Mb (ftp)(http) CHP
Processed data provided as supplementary file
Processed data included within Sample table

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