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Sample GSM1517159 Query DataSets for GSM1517159
Status Public on Jan 15, 2015
Title FL5_mRNA
Sample type RNA
 
Source name CD19+ B cells
Organism Homo sapiens
Characteristics tissue: LN
tumor: FL1-2
age: 52
Sex: male
previously treated for nhl: yes
cell type: follicular lymphoma
Treatment protocol none
Growth protocol none
Extracted molecule total RNA
Extraction protocol RNA was purified using Qiagen RNeasy Kits according to the manufacturer’s protocol.
Label biotin
Label protocol Purified RNA was amplified using Nugen Ovation Pico SL or Ovation Pico kits and labeled using Nugen Encore Biotin kit
 
Hybridization protocol Products were hybridized to Affymetrix Human Gene 1.0 ST arrays according to the manufacturer’s protocol
Scan protocol GS3000
Description Gene expression analysis was performed for FL using Affymetrix Human Gene 1.0 ST arrays
Data processing Gene expression levels were determined using the Affymetrix Expression Console software (v1.2.0.20) with exon-level RMA analysis and default settings
 
Submission date Sep 30, 2014
Last update date Jan 15, 2015
Contact name Jacqueline Payton
E-mail(s) jpayton@wustl.edu
Organization name Washington University School of Medicine
Department Pathology and Immunology
Street address 660 S. Euclid Ave
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platform ID GPL10739
Series (2)
GSE61912 Enhancer Sequence Variants and Transcription Factor Deregulation Synergize to Construct Pathogenic Regulatory Circuits in B Cell Lymphoma (array)
GSE62246 Enhancer Sequence Variants and Transcription Factor Deregulation Synergize to Construct Pathogenic Regulatory Circuits in B Cell Lymphoma

Data table header descriptions
ID_REF
VALUE log2-rma-exon-default-dabg
DETECTION P-VALUE

Data table
ID_REF VALUE DETECTION P-VALUE
7892501 1.51563 0.702622
7892502 2.57712 0.132282
7892503 2.43526 0.0476613
7892504 8.28168 8.17421e-07
7892505 3.04692 0.00532922
7892506 3.55166 0.0251929
7892507 5.21239 0.00122453
7892508 3.10458 0.0101236
7892509 5.98416 2.36852e-05
7892510 2.63701 0.13732
7892511 4.72971 6.90245e-05
7892512 5.16761 0.00326511
7892513 2.53984 0.269006
7892514 9.56165 5.17436e-09
7892515 8.91022 4.55741e-09
7892516 8.62659 4.68385e-09
7892517 4.14072 0.0351705
7892518 1.82798 0.674331
7892519 4.46431 0.0167881
7892520 8.63768 1.54256e-08

Total number of rows: 257430

Table truncated, full table size 6551 Kbytes.




Supplementary file Size Download File type/resource
GSM1517159_FL5.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM1517159_FL5.rma-exon-default-dabg.chp.gz 2.1 Mb (ftp)(http) CHP
Processed data provided as supplementary file
Processed data included within Sample table

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