GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1517158 Query DataSets for GSM1517158
Status Public on Jan 15, 2015
Title FL4_mRNA
Sample type RNA
Source name CD19+ B cells
Organism Homo sapiens
Characteristics tissue: LN
tumor: FL1-2
age: 50
Sex: female
previously treated for nhl: yes
cell type: follicular lymphoma
Treatment protocol none
Growth protocol none
Extracted molecule total RNA
Extraction protocol RNA was purified using Qiagen RNeasy Kits according to the manufacturer’s protocol.
Label biotin
Label protocol Purified RNA was amplified using Nugen Ovation Pico SL or Ovation Pico kits and labeled using Nugen Encore Biotin kit
Hybridization protocol Products were hybridized to Affymetrix Human Gene 1.0 ST arrays according to the manufacturer’s protocol
Scan protocol GS3000
Description Gene expression analysis was performed for FL using Affymetrix Human Gene 1.0 ST arrays
Data processing Gene expression levels were determined using the Affymetrix Expression Console software (v1.2.0.20) with exon-level RMA analysis and default settings
Submission date Sep 30, 2014
Last update date Jan 15, 2015
Contact name Jacqueline Payton
Organization name Washington University School of Medicine
Department Pathology and Immunology
Street address 660 S. Euclid Ave
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL10739
Series (2)
GSE61912 Enhancer Sequence Variants and Transcription Factor Deregulation Synergize to Construct Pathogenic Regulatory Circuits in B Cell Lymphoma (array)
GSE62246 Enhancer Sequence Variants and Transcription Factor Deregulation Synergize to Construct Pathogenic Regulatory Circuits in B Cell Lymphoma

Data table header descriptions
VALUE log2-rma-exon-default-dabg

Data table
7892501 3.11175 0.000238319
7892502 3.20054 0.00109086
7892503 1.93288 0.14128
7892504 8.83267 3.31885e-07
7892505 3.1496 4.52869e-05
7892506 2.10222 0.251673
7892507 3.30955 0.0274489
7892508 2.58609 0.0284681
7892509 10.6339 4.44414e-09
7892510 3.49011 0.00139633
7892511 3.61849 0.000472771
7892512 6.79539 1.64673e-06
7892513 2.13819 0.328608
7892514 8.52393 5.17436e-09
7892515 9.38125 4.55741e-09
7892516 6.74031 8.74819e-08
7892517 4.19642 0.0022293
7892518 1.85853 0.359575
7892519 3.41567 0.0404311
7892520 9.41407 3.16924e-08

Total number of rows: 257430

Table truncated, full table size 6584 Kbytes.

Supplementary file Size Download File type/resource
GSM1517158_FL4.CEL.gz 3.6 Mb (ftp)(http) CEL
GSM1517158_FL4.rma-exon-default-dabg.chp.gz 2.2 Mb (ftp)(http) CHP
Processed data provided as supplementary file
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap