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Sample GSM1510671 Query DataSets for GSM1510671
Status Public on Dec 01, 2014
Title first visit [GG1_000132]
Sample type RNA
 
Source name whole peripheral blood
Organism Homo sapiens
Characteristics age: 48
Sex: F
body mass index: 23.6
ethnicity: ASN
gad7 score: 9
anxiety case/control: case
hybridization batch: Z
rin: 7.2
Treatment protocol na
Growth protocol na
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from whole peripheral blood using Tempus Spin RNA Isolation kit. Quality control was performed using Agilent's Bioanalyzer.
Label Cy3
Label protocol Illumina BeadArray protocol
 
Hybridization protocol Illumina's BeadArray protocol
Scan protocol Illumina's BeadArray protocol and GenomeStudio (Gene expression module)
Description none
Data processing The raw log2 transformed probes were normalized by ANOVA fitting technical effects of date of hybridization and RIN score. The reason why there are so many missing probes in the normalized dataset is because they are below the expression threshold and so not included in the normalization process.
 
Submission date Sep 23, 2014
Last update date Dec 01, 2014
Contact name Aliza P. Wingo
Organization name Atlanta VAMC/Emory University
Department Psychiatry
Street address 1670 Clairmont Rd
City Decatur
State/province GA
ZIP/Postal code 30033
Country USA
 
Platform ID GPL10558
Series (1)
GSE61672 Blood gene expression profiles associated with symptoms of generalized anxiety disorder

Data table header descriptions
ID_REF
VALUE values are log2 transformed normalized intensities
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1698554 6.205 0.3883117
ILMN_2061446 6.673 0
ILMN_1676336 6.489 0.0038961
ILMN_1688755 8.254 0
ILMN_1653165 6.715 0
ILMN_1662364 6.89 0
ILMN_1674698 6.216 0.00649351
ILMN_1700461 6.565 0
ILMN_1784269 5.841 0.02597403
ILMN_1698189 6.286 0
ILMN_2096191 6.347 0
ILMN_1703743 6.681 0
ILMN_2404407 6.312 0.5389611
ILMN_1766054 7.376 0
ILMN_1747627 5.88 0.1012987
ILMN_1743205 7.406 0
ILMN_1812070 6.431 0
ILMN_2094875 6.106 0.1155844
ILMN_1665730 6.265 0
ILMN_2193980 6.963 0.0012987

Total number of rows: 12603

Table truncated, full table size 302 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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