NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1509750 Query DataSets for GSM1509750
Status Public on May 19, 2015
Title ctrl-3
Sample type RNA
 
Source name Fetal liver
Organism Mus musculus
Characteristics strain: C57BL/6
age: E14.5
tissue: liver
Treatment protocol The cells were treated with 100nM OHT or EtOH (control) for 24h.
Growth protocol Lineage negative cells were isolated from E14.5 mouse fetal livers and cultured ex vivo.
Extracted molecule total RNA
Extraction protocol RNA was isolated with Life Technologies' PureLink RNA mini kit according to the manufacturer's protocol.
Label Cy3
Label protocol cRNA was prepared with Illumina® TotalPrep RNA kit according to the manufacturer's protocol Illumina Total Prep RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3
Data processing The data were normalised using quantile normalisation with limma and beadarray in R
 
Submission date Sep 22, 2014
Last update date May 19, 2015
Contact name Diana HP Low
E-mail(s) dlow@imcb.a-star.edu.sg
Organization name Institute of Molecular and Cell Biology
Lab Chromatin, Epigenetics & Differentiation
Street address #03-06, 61 Biopolis Drive, Proteos
City Singapore
ZIP/Postal code 138673
Country Singapore
 
Platform ID GPL6885
Series (2)
GSE61637 Regulation of the core pre-mRNA splicing machinery by MYC and PRMT5 is essential to sustain lymphomagenesis [fetal liver]
GSE61638 Regulation of the core pre-mRNA splicing machinery by MYC and PRMT5 is essential to sustain lymphomagenesis

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1238674 11.52374524 1
ILMN_3062534 9.093166012 1
ILMN_3140158 9.099288022 1
ILMN_2935307 10.86319618 1
ILMN_2603725 7.451787738 0.56015
ILMN_2664884 10.03814524 1
ILMN_1229397 8.121502738 1
ILMN_1225873 7.34357878 0.24937
ILMN_3003575 9.377560847 1
ILMN_2899591 8.067411716 1
ILMN_2658355 7.461657242 0.59023
ILMN_2521511 8.931413018 1
ILMN_2691286 7.359711778 0.28571
ILMN_1251148 7.326707521 0.20802
ILMN_3133267 9.281690739 1
ILMN_2800655 10.20927058 1
ILMN_1237148 9.364421707 1
ILMN_2980721 7.530387563 0.79825
ILMN_3159156 7.400204439 0.38221
ILMN_2746797 7.406167112 0.3985

Total number of rows: 25695

Table truncated, full table size 772 Kbytes.




Supplementary file Size Download File type/resource
GSM1509750_6197801036_F_Grn.idat.gz 1.2 Mb (ftp)(http) IDAT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap