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Sample GSM1509745 Query DataSets for GSM1509745
Status Public on May 19, 2015
Title OHT-1
Sample type RNA
Source name Fetal liver
Organism Mus musculus
Characteristics strain: C57BL/6
age: E14.5
tissue: liver
Treatment protocol The cells were treated with 100nM OHT or EtOH (control) for 24h.
Growth protocol Lineage negative cells were isolated from E14.5 mouse fetal livers and cultured ex vivo.
Extracted molecule total RNA
Extraction protocol RNA was isolated with Life Technologies' PureLink RNA mini kit according to the manufacturer's protocol.
Label Cy3
Label protocol cRNA was prepared with Illumina® TotalPrep RNA kit according to the manufacturer's protocol Illumina Total Prep RNA Amplification Kit
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalisation with limma and beadarray in R
Submission date Sep 22, 2014
Last update date May 19, 2015
Contact name Diana HP Low
Organization name Institute of Molecular and Cell Biology
Lab Chromatin, Epigenetics & Differentiation
Street address #03-06, 61 Biopolis Drive, Proteos
City Singapore
ZIP/Postal code 138673
Country Singapore
Platform ID GPL6885
Series (2)
GSE61637 Regulation of the core pre-mRNA splicing machinery by MYC and PRMT5 is essential to sustain lymphomagenesis [fetal liver]
GSE61638 Regulation of the core pre-mRNA splicing machinery by MYC and PRMT5 is essential to sustain lymphomagenesis

Data table header descriptions
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1238674 11.4335262 1
ILMN_3062534 9.266298394 1
ILMN_3140158 9.168520569 1
ILMN_2935307 11.08092051 1
ILMN_2603725 7.609257232 0.94486
ILMN_2664884 9.916415597 1
ILMN_1229397 8.496569321 1
ILMN_1225873 7.530196951 0.83709
ILMN_3003575 9.098294434 1
ILMN_2899591 7.956927639 1
ILMN_2658355 7.338123723 0.27068
ILMN_2521511 8.716684992 1
ILMN_2691286 7.269186533 0.12657
ILMN_1251148 7.513901941 0.79323
ILMN_3133267 9.334513846 1
ILMN_2800655 10.00856024 1
ILMN_1237148 9.164297035 1
ILMN_2980721 7.369460398 0.34211
ILMN_3159156 7.489222103 0.73559
ILMN_2746797 7.520900259 0.81328

Total number of rows: 25695

Table truncated, full table size 772 Kbytes.

Supplementary file Size Download File type/resource
GSM1509745_6197801036_A_Grn.idat.gz 1.2 Mb (ftp)(http) IDAT
Processed data included within Sample table

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