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Sample GSM1505214 Query DataSets for GSM1505214
Status Public on Sep 17, 2014
Title VAT_111
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 35
bmi: 38.062
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943029_R02C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.801301427
cg00001583 0.07913084
cg00002028 0.079790845
cg00002719 0.192178925
cg00002837 0.376374412
cg00003202 0.046067481
cg00003287 0.268496749
cg00007036 0.915107574
cg00007898 0.044401659
cg00008004 0.13394042
cg00008647 0.080935911
cg00009292 0.148470099
cg00011717 0.920054925
cg00014168 0.687977831
cg00015286 0.727723083
cg00016238 0.738987402
cg00017221 0.113978841
cg00017437 0.05504333
cg00021123 0.7692177
cg00021576 0.098994323

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505214_5822943029_R02C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505214_5822943029_R02C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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