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Sample GSM1505211 Query DataSets for GSM1505211
Status Public on Sep 17, 2014
Title VAT_92
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 39
bmi: 45.764
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943019_R04C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.619373906
cg00001583 0.098869752
cg00002028 0.063217516
cg00002719 0.215473775
cg00002837 0.259796853
cg00003202 0.044637751
cg00003287 0.210408341
cg00007036 0.959076904
cg00007898 0.032224997
cg00008004 0.156584447
cg00008647 0.079711284
cg00009292 0.127448954
cg00011717 0.894431188
cg00014168 0.741030497
cg00015286 0.765599736
cg00016238 0.757367765
cg00017221 0.152000178
cg00017437 0.059103998
cg00021123 0.731051995
cg00021576 0.066977541

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505211_5822943019_R04C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505211_5822943019_R04C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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