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Sample GSM1505210 Query DataSets for GSM1505210
Status Public on Sep 17, 2014
Title VAT_90
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 26
bmi: 34.743
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943019_R02C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.7599541
cg00001583 0.083374758
cg00002028 0.077209981
cg00002719 0.240335619
cg00002837 0.36785026
cg00003202 0.038019961
cg00003287 0.310457922
cg00007036 0.922299993
cg00007898 0.063488633
cg00008004 0.192868054
cg00008647 0.15235938
cg00009292 0.131749292
cg00011717 0.907501409
cg00014168 0.641002027
cg00015286 0.76835076
cg00016238 0.842775352
cg00017221 0.077224768
cg00017437 0.044554829
cg00021123 0.572753711
cg00021576 0.063696608

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505210_5822943019_R02C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505210_5822943019_R02C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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