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Sample GSM1505208 Query DataSets for GSM1505208
Status Public on Sep 17, 2014
Title VAT_105
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 34
bmi: 59.259
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943015_R06C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.809362399
cg00001583 0.111980727
cg00002028 0.078827342
cg00002719 0.083940539
cg00002837 0.32557465
cg00003202 0.03469474
cg00003287 0.172082111
cg00007036 0.920074159
cg00007898 0.062278409
cg00008004 0.116598283
cg00008647 0.076775234
cg00009292 0.138594581
cg00011717 0.899020611
cg00014168 0.698384593
cg00015286 0.636191671
cg00016238 0.844388035
cg00017221 0.085578813
cg00017437 0.058492733
cg00021123 0.802415626
cg00021576 0.099572921

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505208_5822943015_R06C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505208_5822943015_R06C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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