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Sample GSM1505207 Query DataSets for GSM1505207
Status Public on Sep 17, 2014
Title VAT_99
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 49
bmi: 44.607
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943015_R05C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.740886888
cg00001583 0.08495632
cg00002028 0.062244677
cg00002719 0.087178335
cg00002837 0.260692533
cg00003202 0.051272648
cg00003287 0.204720472
cg00007036 0.947290168
cg00007898 0.027911075
cg00008004 0.094582074
cg00008647 0.120061585
cg00009292 0.123589974
cg00011717 0.904445226
cg00014168 0.535668683
cg00015286 0.669809509
cg00016238 0.814040204
cg00017221 0.080501685
cg00017437 0.079951601
cg00021123 0.708211159
cg00021576 0.083721378

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505207_5822943015_R05C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505207_5822943015_R05C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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