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Sample GSM1505206 Query DataSets for GSM1505206
Status Public on Sep 17, 2014
Title VAT_56
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 44
bmi: 54.199
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943015_R04C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.706697324
cg00001583 0.092499032
cg00002028 0.06564795
cg00002719 0.081468548
cg00002837 0.294183187
cg00003202 0.045283671
cg00003287 0.154793092
cg00007036 0.94075514
cg00007898 0.047275866
cg00008004 0.074569621
cg00008647 0.095498629
cg00009292 0.120151061
cg00011717 0.876356137
cg00014168 0.673793857
cg00015286 0.623120084
cg00016238 0.865162804
cg00017221 0.092607592
cg00017437 0.105175177
cg00021123 0.773364678
cg00021576 0.057018512

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505206_5822943015_R04C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505206_5822943015_R04C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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