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Sample GSM1505205 Query DataSets for GSM1505205
Status Public on Sep 17, 2014
Title VAT_97
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 54
bmi: 43.183
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943015_R04C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.711272738
cg00001583 0.101822191
cg00002028 0.068643986
cg00002719 0.071960039
cg00002837 0.398858492
cg00003202 0.048960521
cg00003287 0.209281422
cg00007036 0.892654115
cg00007898 0.049293146
cg00008004 0.12163252
cg00008647 0.214584588
cg00009292 0.13608469
cg00011717 0.90268319
cg00014168 0.682017027
cg00015286 0.840427077
cg00016238 0.846496102
cg00017221 0.080865426
cg00017437 0.069114185
cg00021123 0.712272668
cg00021576 0.065734784

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505205_5822943015_R04C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505205_5822943015_R04C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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