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Sample GSM1505203 Query DataSets for GSM1505203
Status Public on Sep 17, 2014
Title VAT_84
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 40
bmi: 48.231
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943015_R03C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.612679447
cg00001583 0.078698955
cg00002028 0.072178088
cg00002719 0.064272258
cg00002837 0.355849358
cg00003202 0.046972057
cg00003287 0.259260418
cg00007036 0.92899749
cg00007898 0.042438339
cg00008004 0.080745843
cg00008647 0.06397666
cg00009292 0.139937761
cg00011717 0.901061212
cg00014168 0.622303297
cg00015286 0.670839766
cg00016238 0.739942639
cg00017221 0.07728695
cg00017437 0.056384376
cg00021123 0.775227881
cg00021576 0.072559546

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505203_5822943015_R03C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505203_5822943015_R03C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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