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Sample GSM1505201 Query DataSets for GSM1505201
Status Public on Sep 17, 2014
Title VAT_121
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 31
bmi: 37.649
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943014_R06C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.844665653
cg00001583 0.084604829
cg00002028 0.054635834
cg00002719 0.276212219
cg00002837 0.394648989
cg00003202 0.030464698
cg00003287 0.161306631
cg00007036 0.932210953
cg00007898 0.054179104
cg00008004 0.134778878
cg00008647 0.183411155
cg00009292 0.13198851
cg00011717 0.916864806
cg00014168 0.77673919
cg00015286 0.816343523
cg00016238 0.824160312
cg00017221 0.062095936
cg00017437 0.200641885
cg00021123 0.809607513
cg00021576 0.065687464

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505201_5822943014_R06C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505201_5822943014_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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