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Sample GSM1505199 Query DataSets for GSM1505199
Status Public on Sep 17, 2014
Title VAT_130
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 32
bmi: 49.535
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943014_R03C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.646254051
cg00001583 0.092552148
cg00002028 0.075556056
cg00002719 0.128107667
cg00002837 0.373725372
cg00003202 0.041164374
cg00003287 0.33309048
cg00007036 0.950754693
cg00007898 0.048885191
cg00008004 0.140176329
cg00008647 0.177847928
cg00009292 0.111973489
cg00011717 0.93069719
cg00014168 0.618467889
cg00015286 0.772001781
cg00016238 0.790395249
cg00017221 0.094381666
cg00017437 0.044278063
cg00021123 0.71127831
cg00021576 0.094971534

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505199_5822943014_R03C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505199_5822943014_R03C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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