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Sample GSM1505195 Query DataSets for GSM1505195
Status Public on Sep 17, 2014
Title VAT_117
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 51
bmi: 52.392
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943002_R02C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.722562222
cg00001583 0.095606935
cg00002028 0.077392696
cg00002719 0.164731323
cg00002837 0.369266469
cg00003202 0.036835474
cg00003287 0.280106428
cg00007036 0.947821088
cg00007898 0.048999367
cg00008004 0.162603503
cg00008647 0.097000974
cg00009292 0.126023652
cg00011717 0.90468025
cg00014168 0.654472414
cg00015286 0.716891889
cg00016238 0.797727351
cg00017221 0.084023605
cg00017437 0.076479026
cg00021123 0.718054897
cg00021576 0.086128113

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505195_5822943002_R02C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505195_5822943002_R02C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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