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Sample GSM1505194 Query DataSets for GSM1505194
Status Public on Sep 17, 2014
Title VAT_74
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 37
bmi: 53.508
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943002_R02C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.670680353
cg00001583 0.076166296
cg00002028 0.098383006
cg00002719 0.0982921
cg00002837 0.397580823
cg00003202 0.050876448
cg00003287 0.194639085
cg00007036 0.957515106
cg00007898 0.044596309
cg00008004 0.145995058
cg00008647 0.100136176
cg00009292 0.116453773
cg00011717 0.904727345
cg00014168 0.709907797
cg00015286 0.584527548
cg00016238 0.817952444
cg00017221 0.075453485
cg00017437 0.102993909
cg00021123 0.794431485
cg00021576 0.105628446

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505194_5822943002_R02C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505194_5822943002_R02C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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