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Sample GSM1505192 Query DataSets for GSM1505192
Status Public on Sep 17, 2014
Title VAT_78
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 52
bmi: 38.617
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791030_R05C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.850432867
cg00001583 0.084467312
cg00002028 0.062651389
cg00002719 0.122849187
cg00002837 0.35502767
cg00003202 0.031817395
cg00003287 0.167604097
cg00007036 0.964285342
cg00007898 0.079519692
cg00008004 0.127715848
cg00008647 0.138951567
cg00009292 0.159060603
cg00011717 0.942759428
cg00014168 0.841264513
cg00015286 0.889036041
cg00016238 0.737186531
cg00017221 0.061330623
cg00017437 0.081072871
cg00021123 0.814119604
cg00021576 0.066532406

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505192_5822791030_R05C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505192_5822791030_R05C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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