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Sample GSM1505191 Query DataSets for GSM1505191
Status Public on Sep 17, 2014
Title VAT_62
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 47
bmi: 35.154
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791030_R01C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.797990589
cg00001583 0.061592
cg00002028 0.070366825
cg00002719 0.130278519
cg00002837 0.338768046
cg00003202 0.035652624
cg00003287 0.351686996
cg00007036 0.953629335
cg00007898 0.048486534
cg00008004 0.14770957
cg00008647 0.091054481
cg00009292 0.188106791
cg00011717 0.934749983
cg00014168 0.787312414
cg00015286 0.835886973
cg00016238 0.807595188
cg00017221 0.073379248
cg00017437 0.057801491
cg00021123 0.614055076
cg00021576 0.048451613

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505191_5822791030_R01C02_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1505191_5822791030_R01C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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