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Sample GSM1505183 Query DataSets for GSM1505183
Status Public on Sep 17, 2014
Title VAT_75
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 46
bmi: 40.635
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791027_R02C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.809087319
cg00001583 0.080067035
cg00002028 0.044765344
cg00002719 0.146376308
cg00002837 0.337242777
cg00003202 0.03051444
cg00003287 0.209148149
cg00007036 0.928925168
cg00007898 0.069898146
cg00008004 0.097313999
cg00008647 0.103110214
cg00009292 0.121303059
cg00011717 0.94956964
cg00014168 0.856865129
cg00015286 0.917030508
cg00016238 0.884961907
cg00017221 0.123076378
cg00017437 0.084534749
cg00021123 0.814081979
cg00021576 0.061699179

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505183_5822791027_R02C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505183_5822791027_R02C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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