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Sample GSM1505182 Query DataSets for GSM1505182
Status Public on Sep 17, 2014
Title VAT_40
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 67
bmi: 49.931
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791027_R01C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.73779316
cg00001583 0.058496672
cg00002028 0.068420273
cg00002719 0.10080698
cg00002837 0.358752229
cg00003202 0.02783071
cg00003287 0.227585852
cg00007036 0.937273349
cg00007898 0.079154688
cg00008004 0.133894104
cg00008647 0.094650566
cg00009292 0.126683507
cg00011717 0.942072869
cg00014168 0.843077859
cg00015286 0.8493936
cg00016238 0.839415224
cg00017221 0.088792061
cg00017437 0.052077616
cg00021123 0.806834305
cg00021576 0.042149786

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505182_5822791027_R01C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505182_5822791027_R01C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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