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Sample GSM1505179 Query DataSets for GSM1505179
Status Public on Sep 17, 2014
Title VAT_95
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 64
bmi: 38.974
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791026_R01C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.675493725
cg00001583 0.123644956
cg00002028 0.098114559
cg00002719 0.220573421
cg00002837 0.3457654
cg00003202 0.022692621
cg00003287 0.190666262
cg00007036 0.919847211
cg00007898 0.061715303
cg00008004 0.10154839
cg00008647 0.083039317
cg00009292 0.117713283
cg00011717 0.880373565
cg00014168 0.669637339
cg00015286 0.786174072
cg00016238 0.756917976
cg00017221 0.08274244
cg00017437 0.085255296
cg00021123 0.764581207
cg00021576 0.084831382

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505179_5822791026_R01C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505179_5822791026_R01C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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