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Sample GSM1505174 Query DataSets for GSM1505174
Status Public on Sep 17, 2014
Title VAT_79
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 47
bmi: 59.238
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791019_R01C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.684909638
cg00001583 0.114248299
cg00002028 0.073409058
cg00002719 0.116490504
cg00002837 0.402121098
cg00003202 0.019387784
cg00003287 0.210955793
cg00007036 0.958442053
cg00007898 0.054263688
cg00008004 0.131100296
cg00008647 0.101389834
cg00009292 0.178224155
cg00011717 0.868087653
cg00014168 0.622456981
cg00015286 0.802859168
cg00016238 0.886007636
cg00017221 0.088458221
cg00017437 0.089577139
cg00021123 0.711329307
cg00021576 0.071341107

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505174_5822791019_R01C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505174_5822791019_R01C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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