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Sample GSM1505171 Query DataSets for GSM1505171
Status Public on Sep 17, 2014
Title VAT_116
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 53
bmi: 45.085
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791018_R01C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.753249457
cg00001583 0.096768674
cg00002028 0.071840101
cg00002719 0.159932347
cg00002837 0.328922149
cg00003202 0.029539345
cg00003287 0.280466603
cg00007036 0.929948355
cg00007898 0.049417738
cg00008004 0.157687914
cg00008647 0.096085918
cg00009292 0.107606303
cg00011717 0.911017133
cg00014168 0.605002937
cg00015286 0.692490233
cg00016238 0.759138836
cg00017221 0.077370526
cg00017437 0.07758687
cg00021123 0.643665766
cg00021576 0.084611505

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505171_5822791018_R01C01_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1505171_5822791018_R01C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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