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Sample GSM1505165 Query DataSets for GSM1505165
Status Public on Sep 17, 2014
Title VAT_52
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 31
bmi: 63.712
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791012_R06C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.806072089
cg00001583 0.069777597
cg00002028 0.049483707
cg00002719 0.148503432
cg00002837 0.385555834
cg00003202 0.02247809
cg00003287 0.18526958
cg00007036 0.928305381
cg00007898 0.054215147
cg00008004 0.14706923
cg00008647 0.165332268
cg00009292 0.132561921
cg00011717 0.913888723
cg00014168 0.653406198
cg00015286 0.74419183
cg00016238 0.832080749
cg00017221 0.126017159
cg00017437 0.116844582
cg00021123 0.772821649
cg00021576 0.102879421

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505165_5822791012_R06C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505165_5822791012_R06C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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