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Sample GSM1505161 Query DataSets for GSM1505161
Status Public on Sep 17, 2014
Title VAT_96
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 53
bmi: 35.111
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791011_R06C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.678866567
cg00001583 0.086393694
cg00002028 0.04235082
cg00002719 0.131508799
cg00002837 0.364193165
cg00003202 0.030591193
cg00003287 0.204359732
cg00007036 0.934680876
cg00007898 0.056594222
cg00008004 0.191843714
cg00008647 0.083901909
cg00009292 0.128880317
cg00011717 0.913369478
cg00014168 0.647057873
cg00015286 0.786997937
cg00016238 0.781372287
cg00017221 0.06548895
cg00017437 0.096174439
cg00021123 0.653383818
cg00021576 0.11184503

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505161_5822791011_R06C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505161_5822791011_R06C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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