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Sample GSM1505160 Query DataSets for GSM1505160
Status Public on Sep 17, 2014
Title VAT_36
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 65
bmi: 46.283
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791011_R06C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.743940713
cg00001583 0.098303116
cg00002028 0.055483434
cg00002719 0.19918941
cg00002837 0.311022513
cg00003202 0.024243876
cg00003287 0.25088907
cg00007036 0.953932091
cg00007898 0.041207181
cg00008004 0.18592686
cg00008647 0.192571372
cg00009292 0.115547899
cg00011717 0.918130196
cg00014168 0.660854988
cg00015286 0.719458952
cg00016238 0.818665818
cg00017221 0.112609959
cg00017437 0.081569218
cg00021123 0.69158244
cg00021576 0.085415419

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505160_5822791011_R06C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505160_5822791011_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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