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Sample GSM1505158 Query DataSets for GSM1505158
Status Public on Sep 17, 2014
Title VAT_123
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 42
bmi: 40.081
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791008_R06C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.81569406
cg00001583 0.09191614
cg00002028 0.062120913
cg00002719 0.249904848
cg00002837 0.413277732
cg00003202 0.029367562
cg00003287 0.220161275
cg00007036 0.947588597
cg00007898 0.044864885
cg00008004 0.159612861
cg00008647 0.138554659
cg00009292 0.120688436
cg00011717 0.891753596
cg00014168 0.687034791
cg00015286 0.849749746
cg00016238 0.670671701
cg00017221 0.095572205
cg00017437 0.059596786
cg00021123 0.745470852
cg00021576 0.075610006

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505158_5822791008_R06C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505158_5822791008_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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