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Sample GSM1505156 Query DataSets for GSM1505156
Status Public on Sep 17, 2014
Title VAT_51
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 59
bmi: 46.475
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791008_R03C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.782093673
cg00001583 0.083482492
cg00002028 0.068789525
cg00002719 0.086532257
cg00002837 0.360127378
cg00003202 0.058409872
cg00003287 0.195220493
cg00007036 0.955609031
cg00007898 0.044666263
cg00008004 0.114125903
cg00008647 0.127629049
cg00009292 0.10314217
cg00011717 0.897659509
cg00014168 0.751976789
cg00015286 0.773466063
cg00016238 0.800898056
cg00017221 0.068915176
cg00017437 0.078075334
cg00021123 0.781022617
cg00021576 0.065746647

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505156_5822791008_R03C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505156_5822791008_R03C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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