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Sample GSM1505155 Query DataSets for GSM1505155
Status Public on Sep 17, 2014
Title VAT_71
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 41
bmi: 45.867
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791008_R03C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.745538031
cg00001583 0.076963554
cg00002028 0.063211261
cg00002719 0.216393227
cg00002837 0.338499792
cg00003202 0.04543862
cg00003287 0.292523066
cg00007036 0.937419597
cg00007898 0.04323244
cg00008004 0.137312742
cg00008647 0.102910769
cg00009292 0.134941898
cg00011717 0.908175663
cg00014168 0.714711421
cg00015286 0.789686336
cg00016238 0.787546158
cg00017221 0.081595159
cg00017437 0.054763112
cg00021123 0.730212031
cg00021576 0.070217728

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505155_5822791008_R03C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505155_5822791008_R03C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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