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Sample GSM1505154 Query DataSets for GSM1505154
Status Public on Sep 17, 2014
Title VAT_88
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 49
bmi: 57.443
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791008_R02C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.802783811
cg00001583 0.094147531
cg00002028 0.060007363
cg00002719 0.102919259
cg00002837 0.323104177
cg00003202 0.033940616
cg00003287 0.252766105
cg00007036 0.941272207
cg00007898 0.048811189
cg00008004 0.142449031
cg00008647 0.121779546
cg00009292 0.13193774
cg00011717 0.897050473
cg00014168 0.660339196
cg00015286 0.750869692
cg00016238 0.706672143
cg00017221 0.125853603
cg00017437 0.082037775
cg00021123 0.770993746
cg00021576 0.072381137

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505154_5822791008_R02C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505154_5822791008_R02C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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