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Sample GSM1505153 Query DataSets for GSM1505153
Status Public on Sep 17, 2014
Title VAT_83
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 36
bmi: 44.067
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791003_R06C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.748282104
cg00001583 0.096811152
cg00002028 0.066846503
cg00002719 0.14148011
cg00002837 0.355062825
cg00003202 0.031086278
cg00003287 0.221489269
cg00007036 0.954461604
cg00007898 0.039769479
cg00008004 0.185311997
cg00008647 0.147847526
cg00009292 0.160251847
cg00011717 0.914542165
cg00014168 0.667744791
cg00015286 0.817507868
cg00016238 0.676805474
cg00017221 0.129663284
cg00017437 0.085484336
cg00021123 0.676883701
cg00021576 0.093493443

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505153_5822791003_R06C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505153_5822791003_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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