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Sample GSM1505151 Query DataSets for GSM1505151
Status Public on Sep 17, 2014
Title VAT_54
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 49
bmi: 73.617
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791002_R06C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.759677264
cg00001583 0.086410986
cg00002028 0.084135782
cg00002719 0.181506176
cg00002837 0.35057512
cg00003202 0.026445061
cg00003287 0.209902445
cg00007036 0.921278805
cg00007898 0.04909998
cg00008004 0.157137674
cg00008647 0.128658829
cg00009292 0.134851184
cg00011717 0.900440303
cg00014168 0.626053682
cg00015286 0.776368113
cg00016238 0.804938696
cg00017221 0.085193589
cg00017437 0.090635794
cg00021123 0.751061404
cg00021576 0.124350759

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505151_5822791002_R06C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505151_5822791002_R06C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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