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Sample GSM1505150 Query DataSets for GSM1505150
Status Public on Sep 17, 2014
Title VAT_45
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 40
bmi: 59.847
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791002_R06C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.726146811
cg00001583 0.086636917
cg00002028 0.078454752
cg00002719 0.119062554
cg00002837 0.333208654
cg00003202 0.025617295
cg00003287 0.246376156
cg00007036 0.945290613
cg00007898 0.041311546
cg00008004 0.141255071
cg00008647 0.112055043
cg00009292 0.135035069
cg00011717 0.901617383
cg00014168 0.567214662
cg00015286 0.705072128
cg00016238 0.798960236
cg00017221 0.094353255
cg00017437 0.079527743
cg00021123 0.7879761
cg00021576 0.077482054

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505150_5822791002_R06C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505150_5822791002_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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