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Sample GSM1505148 Query DataSets for GSM1505148
Status Public on Sep 17, 2014
Title VAT_127
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 40
bmi: 41.660
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791002_R02C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.746905639
cg00001583 0.079639431
cg00002028 0.067662908
cg00002719 0.083512615
cg00002837 0.404400334
cg00003202 0.03051444
cg00003287 0.208845887
cg00007036 0.93441561
cg00007898 0.046647634
cg00008004 0.102443771
cg00008647 0.125832076
cg00009292 0.144466281
cg00011717 0.912747561
cg00014168 0.622023359
cg00015286 0.694709908
cg00016238 0.702515005
cg00017221 0.080885815
cg00017437 0.089953702
cg00021123 0.721151272
cg00021576 0.082541545

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505148_5822791002_R02C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505148_5822791002_R02C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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