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Sample GSM1505145 Query DataSets for GSM1505145
Status Public on Sep 17, 2014
Title VAT_55
Sample type genomic
Source name severely obese patient_visceral adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 47
bmi: 63.362
tissue: visceral adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791001_R03C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61453 Epigenome analysis of the human visceral adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.732705526
cg00001583 0.092410909
cg00002028 0.071782097
cg00002719 0.121890261
cg00002837 0.37772089
cg00003202 0.029351083
cg00003287 0.306524033
cg00007036 0.93245503
cg00007898 0.030452188
cg00008004 0.138111832
cg00008647 0.116454994
cg00009292 0.133495461
cg00011717 0.909359517
cg00014168 0.665640717
cg00015286 0.746844526
cg00016238 0.775509692
cg00017221 0.091173659
cg00017437 0.077813667
cg00021123 0.732987619
cg00021576 0.078253543

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505145_5822791001_R03C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505145_5822791001_R03C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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