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Sample GSM1505142 Query DataSets for GSM1505142
Status Public on Sep 17, 2014
Title Muscle_71
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 41
bmi: 45.867
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943029_R04C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.64923283
cg00001583 0.09877334
cg00002028 0.066347909
cg00002719 0.178593781
cg00002837 0.468307262
cg00003202 0.035268104
cg00003287 0.416940017
cg00007036 0.953765469
cg00007898 0.063767207
cg00008004 0.121935838
cg00008647 0.077498124
cg00009292 0.13184814
cg00011717 0.867018124
cg00014168 0.576142247
cg00015286 0.737895171
cg00016238 0.814252987
cg00017221 0.066661222
cg00017437 0.13197728
cg00021123 0.682048229
cg00021576 0.073645851

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505142_5822943029_R04C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505142_5822943029_R04C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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