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Sample GSM1505141 Query DataSets for GSM1505141
Status Public on Sep 17, 2014
Title Muscle_79
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 47
bmi: 59.238
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943029_R03C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.743898625
cg00001583 0.068186104
cg00002028 0.064634998
cg00002719 0.217493381
cg00002837 0.427384936
cg00003202 0.035666232
cg00003287 0.388962584
cg00007036 0.831848821
cg00007898 0.068160531
cg00008004 0.185046829
cg00008647 0.079427695
cg00009292 0.151036595
cg00011717 0.837746168
cg00014168 0.637614713
cg00015286 0.753945656
cg00016238 0.890460321
cg00017221 0.104475877
cg00017437 0.055029372
cg00021123 0.66112424
cg00021576 0.072718401

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505141_5822943029_R03C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505141_5822943029_R03C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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