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Sample GSM1505140 Query DataSets for GSM1505140
Status Public on Sep 17, 2014
Title Muscle_77
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 58
bmi: 39.126
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943029_R03C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.694093207
cg00001583 0.062010728
cg00002028 0.061986442
cg00002719 0.312355692
cg00002837 0.411644444
cg00003202 0.02438202
cg00003287 0.475567544
cg00007036 0.917610191
cg00007898 0.061666515
cg00008004 0.170897194
cg00008647 0.0759347
cg00009292 0.152578314
cg00011717 0.879767386
cg00014168 0.577136001
cg00015286 0.667667116
cg00016238 0.782224392
cg00017221 0.098266911
cg00017437 0.070697142
cg00021123 0.648900159
cg00021576 0.092752055

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505140_5822943029_R03C01_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1505140_5822943029_R03C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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