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Sample GSM1505139 Query DataSets for GSM1505139
Status Public on Sep 17, 2014
Title Muscle_59
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 48
bmi: 35.686
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943029_R02C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.759145862
cg00001583 0.06228285
cg00002028 0.062290648
cg00002719 0.286602969
cg00002837 0.423128091
cg00003202 0.033284433
cg00003287 0.38231523
cg00007036 0.927759687
cg00007898 0.055197688
cg00008004 0.109579353
cg00008647 0.080648312
cg00009292 0.127620899
cg00011717 0.882259344
cg00014168 0.484574213
cg00015286 0.800290624
cg00016238 0.711512715
cg00017221 0.080479718
cg00017437 0.052418181
cg00021123 0.651558441
cg00021576 0.077072835

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505139_5822943029_R02C01_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1505139_5822943029_R02C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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